genome.fa.s116.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397369.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_932.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35740

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--2713	171	15.9	170	76	4	1955	34	13	13	39	1.83
3765--4839	171	6.3	170	75	7	732	39	12	11	34	1.80
4199--4816	339	1.8	331	79	3	645	37	13	11	34	1.82
8375--11458	170	18.1	169	75	6	2095	38	13	13	34	1.83
8391--11458	510	6.0	508	78	6	2315	38	13	12	34	1.83
8793--11429	851	3.1	847	82	4	2806	39	13	13	34	1.83
11464--14725	170	19.2	172	76	5	2536	34	13	12	38	1.83
11461--34375	683	33.6	679	69	10	5325	34	13	12	37	1.82
14723--31333	171	96.9	171	70	9	4110	33	13	12	37	1.82
14830--19884	340	14.7	338	72	11	1586	35	13	12	38	1.83
17154--17246	20	4.6	20	85	12	127	45	19	25	9	1.81
17152--17246	42	2.3	40	85	10	131	44	18	26	10	1.82
17277--21605	340	12.7	339	76	6	2831	34	13	12	38	1.82
22397--22519	59	2.1	60	98	1	239	35	4	13	45	1.65
22464--31333	170	51.9	169	74	7	4383	34	13	12	38	1.83
22464--31177	341	25.5	342	74	8	4036	34	13	12	38	1.83
22464--34375	512	23.3	512	73	7	6584	34	13	12	38	1.83
30780--31100	169	1.9	169	80	3	369	35	14	13	37	1.85
31408--34369	171	17.3	168	74	8	1318	36	13	12	38	1.81
31408--34371	341	8.7	339	78	6	2451	36	13	12	38	1.81
34476--34868	170	2.3	170	81	3	425	39	11	13	34	1.82

Tables:   1

The End!