Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397370.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1504.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35642

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--1086
170
6.4
168
75
8
846
40
10
13
35
1.80
2024--2435
169
2.4
168
76
5
418
39
12
13
32
1.82
3002--3337
171
2.0
161
71
13
291
37
11
13
34
1.81
5346--5809
171
2.7
168
81
7
494
39
10
14
34
1.82
5852--7444
169
9.4
164
72
13
461
40
11
12
36
1.79
5852--10301
170
26.3
171
75
7
3069
39
12
13
35
1.82
5838--10189
341
12.8
337
75
7
2673
39
12
13
35
1.82
5352--10189
511
9.6
509
76
7
3332
39
12
13
35
1.82
9691--9977
153
1.9
153
92
0
484
38
13
10
37
1.79
11262--11616
170
2.1
168
80
4
383
39
11
13
35
1.80
13267--13459
97
2.0
97
97
0
368
44
10
12
32
1.77
14163--14568
172
2.4
171
81
3
449
41
13
12
32
1.82
20858--21829
170
5.6
170
76
5
725
33
13
12
38
1.82
21700--21724
10
2.5
10
100
0
50
64
8
20
8
1.46
22968--24432
171
8.6
170
76
7
1078
35
13
12
38
1.82
22938--24315
341
4.0
341
80
5
1294
35
13
12
38
1.82
22940--24301
512
2.7
510
82
5
1544
35
13
12
38
1.83
24553--25159
171
3.6
166
77
7
546
39
12
14
33
1.83
30192--30258
29
2.3
29
100
0
134
38
19
20
20
1.93
30747--30829
35
2.4
35
89
0
121
28
12
28
30
1.92
31119--34056
170
17.2
169
74
5
1844
34
12
12
37
1.81
31123--34056
341
8.6
337
72
6
1637
34
12
12
37
1.81

Tables:   1

The End!