genome.fa.s119.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397372.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1264.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35317

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125--351	109	2.1	110	82	5	271	40	10	18	30	1.85
245--972	171	4.3	169	79	6	688	39	13	13	33	1.84
2502--6248	171	22.0	170	70	7	1417	37	11	13	33	1.82
4169--6231	171	12.1	168	78	8	1620	38	12	14	34	1.84
4169--10361	342	18.2	342	76	7	4731	38	12	14	34	1.83
6239--10361	171	24.3	171	77	5	3338	38	12	13	34	1.83
7677--7714	19	1.9	20	84	10	51	28	13	13	44	1.81
6244--10358	685	6.1	682	77	6	3418	38	12	13	34	1.83
8881--8976	46	2.1	45	92	7	160	22	15	22	38	1.92
10661--12004	171	7.9	170	76	6	1027	38	12	14	34	1.83
10799--12000	511	2.3	510	79	5	1203	39	12	14	34	1.83
12222--12844	169	3.6	168	76	7	517	35	13	14	34	1.85
13128--16530	171	19.9	171	77	5	2715	38	12	14	34	1.84
16631--17497	170	5.1	172	78	6	798	35	13	12	38	1.83
16631--17510	343	2.6	339	79	6	837	35	13	12	38	1.83
19782--22223	171	14.4	169	74	9	1251	39	12	14	34	1.83
19813--22223	342	7.1	339	77	8	1931	39	11	14	34	1.82
21030--22223	172	7.0	170	77	6	1065	38	11	14	35	1.83
20989--22222	343	3.6	340	79	7	1205	39	11	14	35	1.82
24665--26067	171	8.2	169	77	8	1134	37	12	14	33	1.84
23915--25797	343	5.5	341	78	8	1610	39	12	13	34	1.82
23901--25797	514	3.7	508	78	9	1732	39	12	13	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23960--26063	343	6.1	340	76	9	1050	38	12	13	34	1.83
26236--29853	171	21.2	170	78	6	3005	38	11	14	35	1.82
30574--30737	73	2.2	73	79	0	175	24	20	17	37	1.93
31033--35313	171	25.0	170	79	5	3694	38	12	13	35	1.82

Tables:   1

The End!