genome.fa.s120.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397373.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_509.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34992

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109--780	171	3.9	170	75	7	443	37	12	14	34	1.83
984--1921	171	5.5	168	72	6	528	38	13	13	32	1.84
2141--2739	171	3.5	171	78	5	602	40	12	13	33	1.82
3715--4326	171	3.6	171	76	4	617	32	13	13	38	1.84
3724--4362	342	1.9	342	83	3	831	33	13	13	37	1.84
4593--7121	171	14.8	172	72	6	1017	34	13	11	37	1.81
6092--6883	340	2.3	339	80	5	857	36	14	11	36	1.82
6092--7116	511	2.0	503	81	6	1170	36	13	11	37	1.80
12711--12755	24	1.9	23	82	13	56	48	6	13	31	1.68
12801--13113	172	1.9	161	80	8	358	35	14	8	38	1.78
12779--18385	171	32.9	170	71	8	2083	34	13	11	37	1.82
13889--13922	17	1.9	18	88	5	52	23	0	0	76	0.79
12782--18385	511	11.0	508	73	6	3000	34	13	11	37	1.81
12974--18411	854	6.4	850	74	7	2548	34	13	11	37	1.82
14842--17486	682	3.9	673	74	7	1340	34	13	12	37	1.82
20496--21700	170	7.1	170	76	7	863	35	12	12	37	1.82
20496--21700	171	7.1	170	77	5	952	35	12	12	37	1.82
22167--22485	172	1.8	172	82	5	403	35	13	13	37	1.84
21756--22536	342	2.3	341	75	6	783	32	14	12	37	1.84
22534--27779	171	30.9	170	73	5	3084	34	12	11	38	1.80
22615--23414	341	2.4	325	76	11	716	35	11	11	39	1.76
22714--27572	341	14.3	333	73	8	2111	34	12	11	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28995--29474	172	2.8	170	80	3	525	38	14	14	32	1.86
28995--31700	171	15.9	170	71	7	1384	37	12	13	33	1.82
31904--32922	171	5.9	172	76	7	838	38	11	13	33	1.81
33025--34405	170	8.1	171	74	7	848	37	12	13	34	1.82
33025--34405	171	8.1	170	74	7	817	37	12	13	34	1.82
33705--34384	341	2.0	332	79	9	722	37	12	14	34	1.83
34633--34992	171	2.1	171	82	6	442	41	13	11	33	1.81

Tables:   1

The End!