genome.fa.s1222.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398475.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1771.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15488

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271--433	24	6.3	25	71	18	93	26	12	19	41	1.87
298--433	24	5.2	24	73	17	105	25	12	20	41	1.88
539--1068	171	3.1	171	83	3	557	38	12	12	36	1.82
3341--4581	170	7.3	169	78	4	982	33	13	12	39	1.83
3341--4546	341	3.5	336	80	5	1099	33	13	13	39	1.83
3346--4581	171	7.3	168	77	7	958	33	13	12	39	1.83
5219--5735	171	3.0	169	77	3	500	38	11	11	35	1.79
5219--5835	171	3.6	171	77	1	477	38	11	11	35	1.78
8168--8551	171	2.2	170	78	2	392	30	13	12	41	1.81
12966--13283	160	2.0	161	83	5	412	35	11	15	37	1.84
11976--14371	514	4.7	509	78	7	2082	34	14	13	38	1.85
11976--14384	171	14.1	170	76	5	1889	34	14	13	37	1.85
14509--15250	342	2.2	341	80	6	813	33	13	12	39	1.83
15132--15401	142	1.9	142	82	0	342	33	14	11	40	1.82

Tables:   1

The End!