Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397376.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1257.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34109

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2432--2855
170
2.5
173
78
8
436
40
9
12
37
1.75
5036--5410
173
2.2
170
83
2
448
36
12
10
38
1.76
7796--12587
171
28.1
171
75
7
3054
35
12
10
39
1.79
16435--16931
170
2.9
171
85
3
659
35
13
10
41
1.79
17630--18391
170
4.5
168
79
7
714
35
14
11
38
1.82
19450--20639
338
3.5
339
79
5
967
35
13
10
39
1.80
19178--22820
170
21.5
170
70
10
1086
34
14
11
38
1.81
20691--22820
171
12.5
170
74
6
1332
33
14
11
37
1.82
20691--22661
683
2.9
681
77
5
1680
33
14
11
37
1.82
21741--22661
339
2.7
338
81
3
848
33
14
11
38
1.83
21978--22815
341
2.5
331
79
5
731
33
14
11
38
1.82
23914--24247
169
2.0
171
86
3
478
35
15
10
38
1.81
24863--25278
172
2.4
171
76
3
415
34
12
9
41
1.75
25896--27132
170
7.3
170
81
6
1159
35
14
11
38
1.82
25896--27132
342
3.6
336
80
7
1250
35
14
11
38
1.82
29263--29673
171
2.4
169
79
4
432
36
11
10
40
1.77
32762--33070
170
1.9
160
81
10
372
39
10
12
34
1.78
33085--33399
170
1.9
161
83
0
326
36
12
14
33
1.83

Tables:   1

The End!