Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398488.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1783.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26269

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1066--1439
170
2.2
171
80
4
407
40
11
14
32
1.83
910--1731
171
4.8
170
72
6
520
36
12
14
33
1.84
5639--6286
170
3.8
170
78
7
636
35
14
9
39
1.79
5673--6377
341
2.1
340
79
6
741
35
14
10
39
1.81
7161--7724
171
3.3
166
75
9
521
33
13
11
40
1.80
9758--10196
171
2.6
169
82
6
482
36
14
11
37
1.82
10758--11466
171
4.2
170
77
5
585
38
11
12
35
1.81
11162--11551
170
2.3
170
83
4
457
39
11
13
34
1.82
12288--12930
171
3.8
167
76
6
506
39
11
11
35
1.77
13672--14052
202
1.9
201
82
2
478
39
11
13
35
1.80
13852--14939
172
6.3
172
78
6
1003
37
12
13
36
1.83
13852--14954
346
3.2
344
79
5
1142
37
12
13
36
1.83
15593--16773
171
6.9
170
68
4
536
35
11
13
34
1.80
20088--21581
171
8.7
169
80
5
1434
38
11
13
35
1.81
20088--21581
341
4.4
342
79
5
1493
38
11
13
35
1.81
21329--21858
284
1.9
284
82
3
681
41
10
12
34
1.79
21605--22015
170
2.4
170
82
4
470
39
10
14
36
1.80
21127--22010
455
1.9
455
83
3
1145
40
11
13
34
1.81
22873--25853
171
17.4
172
78
5
2473
39
11
13
35
1.80
22867--25853
343
8.7
340
77
6
2547
39
11
12
35
1.80
22883--25845
515
5.8
508
78
5
2612
39
11
13
36
1.80

Tables:   1

The End!