genome.fa.s126.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397379.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1987.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33047

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--306	169	1.8	169	80	4	375	36	14	14	33	1.87
331--734	171	2.4	171	79	6	460	38	12	14	34	1.84
806--1356	171	3.2	170	81	3	669	34	13	12	39	1.82
806--1485	171	4.0	170	79	3	643	34	13	13	38	1.84
806--1451	342	1.9	342	81	5	777	34	13	13	38	1.84
1586--2758	170	6.9	171	79	6	1071	38	14	13	34	1.84
2617--2904	146	2.0	146	80	2	328	34	14	14	36	1.87
2757--4092	171	7.8	170	79	5	1189	39	12	13	34	1.83
2757--4092	343	3.9	338	79	6	1334	39	12	13	34	1.83
3954--4245	146	2.0	146	84	5	376	35	13	14	36	1.86
4184--5528	171	7.9	170	76	6	835	38	13	13	34	1.83
6921--7689	172	4.5	170	76	7	605	39	12	13	33	1.83
7805--8129	171	1.9	170	81	5	397	37	11	14	36	1.82
7799--8271	170	2.8	170	77	7	483	39	10	13	35	1.80
8330--11390	171	17.9	170	76	6	1953	34	14	12	37	1.84
8493--11273	341	8.2	338	76	5	1662	34	13	12	38	1.84
11761--12207	171	2.6	171	80	1	529	32	13	13	37	1.84
13955--14369	172	2.4	171	80	6	453	38	14	13	33	1.85
13943--15102	171	6.8	170	78	6	795	38	14	13	33	1.85
14266--15102	342	2.4	341	81	4	979	39	13	13	33	1.84
15203--23703	342	25.0	340	76	8	5063	34	13	13	38	1.84
15203--16563	171	8.0	171	78	6	974	35	13	13	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16417--16704	145	2.0	146	80	8	329	36	14	14	34	1.87
16562--23197	171	38.9	170	77	6	4279	34	13	13	38	1.83
23198--23852	170	3.9	170	80	4	554	32	13	14	37	1.85
24266--25340	170	6.3	171	74	7	559	38	11	12	34	1.80
25739--26142	171	2.4	171	79	2	409	38	13	15	33	1.86
27205--27605	170	2.3	169	77	6	432	37	12	14	35	1.85
27205--27673	173	2.7	168	74	7	399	35	14	14	35	1.86
28120--28754	317	2.0	316	83	5	791	37	14	13	34	1.85
28438--28787	171	2.0	171	85	2	461	38	14	12	34	1.84
28784--30936	170	12.7	170	79	5	1810	38	14	13	33	1.85
28528--29099	312	1.8	312	82	2	736	41	13	11	33	1.80
28828--30936	341	6.2	335	78	7	1569	38	13	13	33	1.84
30791--31081	146	2.0	145	80	6	329	34	13	15	37	1.86
30935--31771	171	4.9	168	78	6	722	38	12	13	35	1.83

Tables:   1

The End!