genome.fa.s127.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397380.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1720.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32903

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217--2537	171	13.7	170	73	5	1283	33	13	12	37	1.83
1115--2537	341	4.2	339	76	5	1009	32	13	12	38	1.83
217--2068	512	3.6	512	75	4	1346	33	13	12	37	1.83
10283--11519	341	3.6	336	79	6	1134	34	12	12	40	1.81
10283--11519	171	7.2	169	79	5	1031	34	12	12	40	1.81
14257--14281	12	2.1	12	100	0	50	76	0	8	16	1.02
16896--17433	171	3.2	168	80	4	621	35	11	13	39	1.82
16905--18026	591	1.9	590	83	2	1446	36	13	12	37	1.83
17476--19951	171	14.6	170	77	5	1981	34	13	12	39	1.83
17496--19951	341	7.2	340	79	6	2066	34	13	12	39	1.82
22049--27623	170	32.8	171	73	5	2308	34	13	12	37	1.82
22399--32903	511	20.5	512	71	9	2742	33	13	12	37	1.83
22050--32903	341	31.7	342	71	8	3327	33	13	12	37	1.83
22000--27678	171	33.4	169	72	7	2101	34	13	12	37	1.82
22316--28576	340	18.4	337	73	8	2188	34	13	12	37	1.82
27686--28934	171	7.4	169	71	6	686	34	12	12	36	1.82
29035--32903	171	22.6	171	75	4	2864	33	13	13	38	1.84
29811--29862	22	2.4	22	86	0	77	28	9	13	48	1.74
29035--32903	342	11.3	339	75	5	3185	33	13	13	38	1.84
30329--32623	853	2.7	838	77	6	2005	33	13	12	39	1.83
29035--32902	682	5.6	681	85	3	4794	33	13	13	38	1.84

Tables:   1

The End!