genome.fa.s1273.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398526.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1818.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18243

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--2423	171	14.2	171	81	4	2528	35	13	12	38	1.84
1--2423	341	7.1	337	81	5	2541	35	13	12	38	1.84
1--2423	512	4.7	504	80	5	2521	35	13	12	38	1.84
3301--4599	171	7.6	169	81	5	1305	36	13	11	38	1.81
3301--4585	513	2.5	514	83	4	1538	36	13	11	38	1.82
6323--8256	171	11.3	170	81	5	1942	35	14	12	37	1.85
9093--9775	171	4.0	171	82	4	813	35	13	12	37	1.83
9093--9775	341	2.0	342	87	2	987	35	13	12	37	1.83
12560--13756	171	7.0	171	79	4	1135	34	15	12	37	1.85
12560--13762	341	3.5	342	80	5	1255	34	15	12	37	1.85
14395--14733	172	2.0	169	80	9	384	36	12	11	39	1.80
16860--17444	169	3.5	169	78	9	495	35	14	13	35	1.86
16664--17444	171	4.6	166	77	8	548	35	14	12	35	1.83
17687--18243	170	3.3	168	79	5	559	34	15	12	37	1.84

Tables:   1

The End!