Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397382.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_880.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32725

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
690--1907
171
7.1
168
75
6
909
34
13
11
37
1.81
554--1907
342
4.0
340
75
5
1122
33
13
11
36
1.82
554--1906
513
2.6
510
78
5
1226
33
13
11
36
1.82
7370--8401
171
6.0
170
75
5
767
34
12
11
36
1.79
7503--8401
171
5.3
171
77
4
816
35
13
11
37
1.80
7503--8224
343
2.1
334
81
6
824
35
13
11
37
1.81
7684--8401
340
2.1
341
83
4
867
36
12
11
37
1.79
11369--11696
170
2.0
156
74
11
266
34
12
10
37
1.78
12072--14413
171
13.7
169
72
6
1269
33
13
10
36
1.80
14723--16063
171
7.8
171
71
6
651
34
12
10
36
1.79
17822--18160
171
2.1
160
76
11
374
36
10
14
36
1.80
21951--22416
171
2.7
171
77
5
419
34
13
10
37
1.78
25466--28085
170
15.4
171
76
6
2119
34
14
11
37
1.81
25466--27560
341
6.2
341
79
6
1985
35
14
11
38
1.82
27510--27539
11
2.6
12
94
5
53
40
0
0
60
0.97
30166--32544
171
13.9
169
71
9
1052
35
11
14
34
1.82
30166--32725
342
7.5
340
75
4
1775
35
11
14
34
1.81
30170--32540
511
4.6
505
73
6
1431
35
11
14
34
1.82

Tables:   1

The End!