genome.fa.s131.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397384.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1157.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31727

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147--722	163	3.4	162	79	8	491	35	14	10	40	1.80
1--1393	170	8.3	168	76	9	918	36	13	10	39	1.79
686--1000	161	2.0	160	80	6	352	37	11	9	41	1.74
180--1394	331	3.6	325	76	9	935	36	13	10	40	1.78
4366--5665	170	7.7	168	71	5	740	37	9	13	33	1.77
4932--5260	169	2.0	160	77	8	322	38	8	14	35	1.77
6005--6732	170	4.3	169	74	4	588	40	10	13	32	1.78
7703--9200	171	8.8	171	76	6	1038	38	11	13	34	1.82
7954--9114	172	6.8	171	78	5	830	39	11	13	35	1.81
7978--8929	343	2.8	340	79	4	901	40	11	13	34	1.81
7953--9114	515	2.3	512	80	4	1248	39	11	13	35	1.81
9312--9639	170	1.9	169	81	3	390	38	10	13	34	1.79
13882--14745	170	5.1	169	79	4	788	40	10	13	33	1.79
13882--14684	339	2.4	339	78	6	827	40	10	13	33	1.80
15106--15481	172	2.2	172	83	1	450	36	12	15	35	1.85
17526--17849	171	2.0	158	77	13	305	40	13	9	32	1.77
18082--18589	170	3.0	171	81	2	545	34	13	12	36	1.83
18749--19486	171	4.3	169	76	6	539	34	13	9	39	1.78
18807--19482	341	2.0	331	74	10	625	34	13	9	38	1.78
18971--19486	170	3.0	171	79	5	424	36	13	9	38	1.78
20002--24831	172	28.3	170	72	7	1733	34	13	10	38	1.79
20714--23031	341	6.8	334	71	10	969	34	12	10	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20002--23813	341	11.2	331	71	10	858	33	13	10	38	1.79
27777--28088	171	1.8	172	79	3	369	38	9	13	35	1.77

Tables:   1

The End!