Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397387.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1444.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29104

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2122--2429
171
1.8
171
81
5
390
37
11
14
36
1.82
3310--3967
338
2.0
329
78
8
693
37
12
14
33
1.84
3309--4050
171
4.4
168
74
7
570
36
12
15
33
1.86
3311--4050
342
2.2
337
79
5
760
36
12
15
33
1.86
4331--4692
171
2.1
170
78
4
388
40
12
12
34
1.81
6920--6962
18
2.3
18
88
11
61
44
2
0
53
1.13
7987--10132
171
12.6
170
75
6
1628
38
13
14
31
1.85
8279--10140
851
2.2
833
80
5
2091
37
13
14
32
1.85
12284--12455
60
2.8
60
79
9
179
27
18
29
23
1.98
13574--14740
171
6.8
172
81
4
1148
38
13
14
33
1.85
13588--18833
342
15.5
341
75
7
3709
39
12
14
34
1.83
14596--14869
139
2.0
140
87
3
401
43
11
13
31
1.79
13588--18882
512
10.4
505
75
7
3744
39
12
14
34
1.83
14794--18842
683
5.9
666
77
7
2386
39
12
14
34
1.83
14758--18882
171
24.1
170
77
5
3152
39
12
13
34
1.82

Tables:   1

The End!