genome.fa.s135.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397388.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_338.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28688

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
643--1070	172	2.5	170	77	2	433	35	13	12	35	1.82
1679--1937	131	2.0	131	83	3	324	35	15	13	35	1.86
1811--2150	173	2.0	170	82	5	416	34	14	11	40	1.82
2225--5212	172	17.4	169	75	4	1704	33	13	11	37	1.81
5716--10828	171	29.9	171	75	4	3709	34	13	10	37	1.80
6551--6882	170	2.0	161	84	1	351	37	12	9	37	1.76
5930--10071	172	24.2	171	73	7	625	35	13	10	37	1.79
11741--11783	21	2.0	21	86	0	59	48	13	9	27	1.73
12260--13796	171	8.9	170	72	6	808	33	13	11	38	1.81
12665--13796	343	3.3	339	73	6	861	34	13	12	38	1.82
14182--14636	171	2.7	171	74	7	381	36	12	10	38	1.78
15564--16404	171	4.9	171	77	4	671	34	13	10	37	1.79
16520--21595	171	29.7	170	72	5	2448	34	13	11	37	1.80
16533--21602	343	14.8	341	72	6	2434	34	13	11	37	1.80
21900--22227	171	2.0	161	77	9	311	36	13	10	35	1.79
22479--22829	152	2.3	152	81	1	470	34	15	9	37	1.79
23176--23527	170	2.1	171	86	1	492	37	13	10	38	1.79
23666--23990	172	1.9	172	81	8	403	35	12	13	38	1.82
24614--26065	341	4.2	340	75	5	1009	34	13	10	38	1.79
24000--26065	171	12.1	170	72	6	1130	34	12	10	37	1.79
26446--27321	171	5.1	169	76	4	711	34	13	11	38	1.80
27476--28422	172	5.5	171	76	7	731	33	12	11	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27492--28310	171	4.8	171	76	8	560	34	12	11	39	1.80

Tables:   1

The End!