genome.fa.s1372.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398625.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1911.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30771

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1391--1952	171	3.3	166	79	5	595	35	13	15	35	1.87
2253--2608	171	2.1	171	82	1	435	38	12	11	37	1.80
5031--7048	171	11.8	170	77	5	1584	36	12	13	36	1.83
5489--6721	681	1.8	683	82	5	1614	37	12	13	36	1.83
5031--6938	341	5.6	338	77	5	1597	37	12	13	36	1.83
7850--8219	172	2.2	170	81	1	418	37	12	12	38	1.80
9243--10717	171	8.6	171	77	5	1192	37	12	13	36	1.83
9254--10717	342	4.3	342	77	4	1351	37	12	13	36	1.83
11697--13527	343	5.3	341	77	5	1691	36	13	13	36	1.84
11783--13402	515	3.1	512	86	3	2137	35	14	13	37	1.85
11704--13527	172	10.6	172	77	4	1583	36	13	13	36	1.84
11718--13527	515	3.5	515	83	4	2123	36	13	13	36	1.84
13976--14621	171	3.8	169	78	5	604	38	13	13	34	1.83
14726--15088	171	2.1	171	83	1	440	38	12	12	35	1.82
15192--15997	171	4.7	171	79	4	757	37	11	12	37	1.80
15193--15997	342	2.3	341	79	5	854	38	11	12	37	1.80
16114--16398	150	1.9	150	86	2	412	37	12	13	36	1.83
16258--17276	342	3.0	341	79	4	926	37	12	14	36	1.84
16261--17289	171	6.0	171	77	4	822	37	12	14	36	1.83
17394--18916	171	8.9	170	77	6	1299	36	13	12	37	1.83
17397--18916	511	3.0	506	77	6	1522	36	13	12	37	1.83
19818--21089	171	7.4	170	77	6	1109	35	13	12	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19818--21089	343	3.7	337	79	5	1203	35	13	12	38	1.83
21349--22745	171	8.2	168	76	6	1023	36	12	12	38	1.82
21349--22745	342	4.1	336	75	8	1177	36	12	12	38	1.82
26781--27281	172	2.9	171	77	5	535	35	13	12	38	1.82
29686--30771	171	6.4	169	78	5	988	35	13	13	37	1.84

Tables:   1

The End!