Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397391.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1523.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27730

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
448--4586
171
24.0
171
77
7
3324
35
12
12
38
1.81
566--4509
170
22.9
168
74
9
1306
36
12
12
38
1.81
1064--1127
32
2.0
32
100
0
128
31
21
18
28
1.97
4759--6229
340
4.3
337
77
5
1188
33
12
12
37
1.82
4766--6215
171
8.5
171
77
7
1029
33
12
12
37
1.82
6927--6951
8
3.1
8
100
0
50
64
0
0
36
0.94
8115--8175
22
2.8
22
76
14
63
57
0
40
1
1.08
11148--12063
171
5.4
169
74
9
664
35
11
13
36
1.81
13372--14975
170
9.4
169
79
6
1394
35
13
12
38
1.83
13372--14977
342
4.7
344
78
5
1522
35
13
12
38
1.83
13372--14977
513
3.1
511
78
6
1443
35
13
12
38
1.83
16482--16520
21
1.9
21
89
5
62
46
15
17
20
1.84
16890--17251
170
2.1
171
79
6
396
36
12
13
38
1.82
20162--20488
172
2.0
160
76
12
295
39
13
10
33
1.79
22271--25682
171
20.0
169
75
6
2142
37
12
13
36
1.83
22939--25682
514
5.3
513
81
4
2870
37
12
13
36
1.83
24218--24256
20
1.9
20
84
5
51
20
20
12
46
1.83
22271--25626
685
4.9
678
78
6
2971
37
12
13
36
1.83
26285--27724
172
8.4
170
73
7
972
36
12
11
35
1.80

Tables:   1

The End!