Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397394.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1067.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26308

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
431--782
170
2.1
170
81
2
411
36
15
11
37
1.82
266--792
171
3.1
169
74
5
443
34
13
12
38
1.82
1738--10584
171
51.4
169
69
10
2096
34
13
12
38
1.82
1737--10713
511
17.5
509
73
9
4387
34
13
12
38
1.82
3702--10085
171
37.3
169
71
8
3205
34
13
12
38
1.82
6666--6704
21
1.9
21
84
5
53
48
15
12
23
1.79
10358--10409
22
2.4
21
78
9
59
36
0
3
59
1.16
10438--10702
146
1.8
145
82
5
338
29
14
12
43
1.82
10646--10791
79
1.8
79
85
2
204
32
8
8
50
1.63
11077--11658
171
3.4
169
75
5
494
36
14
10
38
1.81
12371--13360
171
5.8
169
75
8
715
34
12
11
40
1.80
12366--13360
342
2.9
338
78
6
1006
34
12
11
40
1.80
15006--15520
170
3.0
168
71
7
446
33
12
13
38
1.83
17755--19053
171
7.6
169
75
6
969
34
12
12
40
1.81
17699--21600
340
11.3
342
72
10
1740
34
13
12
38
1.83
17730--19079
512
2.6
508
77
7
1316
34
12
12
39
1.82
19162--21121
170
11.5
168
74
10
1047
34
13
12
39
1.83
19162--25128
510
11.6
509
72
10
1881
34
13
12
38
1.82
21602--25356
171
22.1
170
73
7
1829
34
13
12
37
1.82
21602--25356
343
11.0
336
72
8
1460
34
13
12
37
1.82
24555--25100
172
3.2
171
78
4
440
35
12
11
40
1.78

Tables:   1

The End!