genome.fa.s1430.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398683.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_197.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102300

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1515--1936	171	2.5	171	81	3	492	35	13	13	37	1.84
2186--2764	171	3.4	171	80	4	535	39	12	13	35	1.81
4831--5743	171	5.3	170	77	6	754	36	13	14	35	1.85
4867--5743	342	2.6	341	79	5	874	37	13	14	35	1.85
6172--7285	171	6.5	171	77	6	970	37	12	14	35	1.84
6200--7285	343	3.2	337	79	7	1050	38	12	14	35	1.83
6183--7285	514	2.1	511	79	6	1183	38	12	14	35	1.83
8811--9204	170	2.3	169	80	4	407	33	13	11	40	1.82
10951--11490	171	3.2	169	81	4	604	36	14	12	36	1.83
11524--12470	171	5.6	170	77	5	770	35	14	11	38	1.82
11504--12462	341	2.8	339	79	5	900	35	14	11	37	1.82
20375--21801	172	8.4	171	79	5	1411	36	12	11	39	1.80
20379--21801	341	4.2	340	79	7	1389	36	13	11	39	1.80
22027--23724	171	10.0	169	83	5	1749	35	13	11	38	1.81
22027--23724	511	3.3	503	81	5	1876	35	13	11	38	1.81
26420--26741	171	1.9	171	81	5	391	35	12	14	37	1.84
31195--32448	171	7.3	170	82	5	1354	35	13	11	39	1.81
32469--34953	171	14.6	169	81	6	2546	35	13	11	38	1.82
32469--34953	341	7.3	338	80	6	2462	35	13	11	38	1.82
35663--36230	171	3.3	169	81	6	567	35	13	11	39	1.81
36584--38584	171	11.7	170	77	7	1626	35	14	10	37	1.82
36584--38584	342	5.9	342	78	6	1848	35	14	10	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47009--47318	171	1.8	169	83	2	406	37	12	12	36	1.82
48165--48836	171	3.9	171	83	3	757	39	11	12	36	1.80
48165--48836	342	2.0	340	83	3	850	39	11	12	36	1.80
48891--49425	172	3.1	173	78	7	502	37	11	14	36	1.82
48986--49697	172	4.2	172	75	6	513	38	10	14	35	1.80
50772--51241	171	2.7	171	78	1	424	37	11	13	35	1.80
51342--52683	171	7.7	171	74	11	873	36	13	11	37	1.81
51934--52311	203	1.9	203	83	4	503	38	13	11	36	1.81
53405--54533	171	6.6	170	78	7	1049	37	14	10	37	1.80
53405--54533	341	3.3	332	78	10	1065	37	14	10	37	1.80
56119--56156	20	2.0	19	90	10	60	34	18	5	42	1.73
61102--62222	171	6.6	170	85	2	1309	35	13	10	39	1.81
61102--62222	343	3.3	337	84	3	1298	35	13	10	39	1.81
66528--67580	171	6.2	171	80	4	1027	37	11	13	36	1.82
66528--67658	343	3.3	340	79	6	1153	37	11	13	36	1.82
67383--67420	20	2.0	18	90	10	58	34	18	5	42	1.73
69691--69729	20	1.9	21	89	5	62	48	10	15	25	1.76
70496--71523	171	6.0	172	83	5	1190	35	14	11	38	1.83
70496--71523	342	3.0	341	84	4	1377	35	14	11	38	1.83
71855--73553	171	9.9	169	72	6	721	33	13	11	36	1.79
76062--76538	170	2.8	168	83	6	559	36	12	11	38	1.81
76725--77187	171	2.7	170	81	6	533	34	14	10	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77562--78501	171	5.5	167	76	10	779	37	12	14	36	1.83
77582--78502	344	2.7	339	76	11	884	37	12	13	36	1.83
83631--83968	171	2.0	171	80	4	378	37	11	15	33	1.83
88645--89356	172	4.2	171	81	5	773	38	12	13	35	1.83
88676--89822	343	3.3	342	74	12	913	38	11	14	35	1.83
89356--89822	170	2.7	171	82	4	500	39	10	14	34	1.81
88986--89705	369	1.9	370	82	4	880	38	12	14	35	1.83
89356--89822	171	2.7	170	81	6	509	39	10	14	34	1.81
89931--90920	171	5.9	171	81	5	1044	37	13	11	38	1.81
90300--90917	170	3.7	160	80	7	585	37	12	11	38	1.79
90460--90909	170	2.6	170	87	0	612	37	12	11	38	1.79
92700--93585	171	5.2	171	81	4	882	38	10	15	34	1.82

Tables:   1

The End!