genome.fa.s1434.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398687.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1973.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7457

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--942	171	5.6	170	75	6	595	35	13	12	37	1.83
802--1450	171	3.9	159	73	13	362	34	13	13	38	1.83
961--1444	171	2.8	170	81	3	540	35	13	12	38	1.83
1600--3272	171	9.9	171	76	7	1117	35	13	12	37	1.82
2528--2821	158	1.9	158	83	1	392	36	14	12	36	1.84
3409--5090	171	9.8	170	79	4	1623	34	13	13	37	1.84
4973--5201	122	1.9	122	83	3	300	38	17	15	28	1.90
4802--5343	293	1.8	292	81	4	680	38	14	13	34	1.85
5095--7457	171	13.9	169	79	6	1963	36	12	13	37	1.83
4456--5728	635	2.0	635	81	4	1469	35	13	13	36	1.85
4632--5543	464	2.0	463	82	5	1108	36	13	14	35	1.86
5095--7454	513	4.6	511	78	6	2258	36	13	13	37	1.83
5095--7457	342	6.9	339	79	5	2223	36	12	13	37	1.83

Tables:   1

The End!