genome.fa.s144.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397397.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_248.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25797

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2796--4475	171	9.8	171	78	4	1417	34	13	11	39	1.81
2796--4467	341	4.9	340	78	5	1543	34	13	11	40	1.81
5190--5582	170	2.3	169	84	5	499	34	12	11	40	1.81
6687--7221	171	3.2	169	73	6	476	33	13	11	39	1.81
8677--9069	169	2.3	167	80	7	407	32	12	13	41	1.83
9628--11895	170	13.3	170	75	6	1597	38	12	14	33	1.83
9628--11890	341	6.6	337	82	5	2184	38	12	14	33	1.83
11996--12573	171	3.4	168	79	5	595	35	14	11	37	1.83
12855--13213	171	2.1	171	80	3	409	36	14	10	38	1.81
15967--17371	170	8.2	170	78	5	1233	38	12	13	35	1.83
16243--17371	342	3.3	342	78	4	854	38	12	13	35	1.84
16096--17891	512	3.6	510	75	9	1475	39	12	13	35	1.82
17257--17514	143	1.8	142	83	4	340	40	13	8	37	1.74
17436--17875	172	2.6	172	80	5	464	40	11	12	35	1.79
17906--19533	171	9.5	171	76	5	1170	39	11	14	35	1.82
17979--19484	683	2.2	683	79	4	1547	39	11	13	35	1.82

Tables:   1

The End!