genome.fa.s1462.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398715.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_200.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56326

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
815--2533	171	10.1	169	71	7	654	35	13	11	35	1.82
815--2544	342	5.1	341	75	4	966	35	13	11	35	1.82
2692--3022	170	2.0	161	86	3	380	35	13	12	35	1.83
3677--4286	171	3.6	170	83	2	729	35	14	9	38	1.79
4355--4805	170	2.6	170	84	2	557	36	12	11	39	1.80
4910--5242	170	2.0	161	78	8	339	34	13	12	36	1.83
4881--5821	171	5.5	169	75	5	739	34	14	13	36	1.84
4881--5821	342	2.8	338	76	4	859	34	14	13	36	1.84
6061--6524	171	2.7	169	77	3	414	35	13	11	34	1.81
7134--7448	171	1.9	160	83	1	317	37	13	11	34	1.80
7676--8458	171	4.6	171	73	8	526	36	13	10	37	1.81
8829--9363	171	3.1	170	81	2	552	36	12	11	37	1.80
9851--10176	170	2.0	161	79	4	282	35	12	11	37	1.80
10726--11215	171	2.9	168	78	5	509	37	13	13	36	1.83
11445--11918	170	2.8	171	79	4	431	36	12	11	37	1.80
12021--12849	340	2.4	340	79	3	889	35	13	12	35	1.83
12021--12849	171	4.9	171	78	3	796	35	13	12	35	1.83
13757--14697	171	5.5	170	73	5	571	35	14	11	35	1.83
14814--15404	171	3.5	170	78	6	538	36	12	14	35	1.84
15518--16314	171	4.7	171	75	4	671	35	12	12	36	1.82
16773--18119	171	7.9	169	74	6	692	36	12	13	35	1.82
16773--18119	341	3.9	340	71	8	735	36	12	13	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18237--18724	172	2.8	170	77	7	459	36	12	13	35	1.83
19975--20301	170	2.0	161	79	8	345	34	13	13	34	1.85
20659--22524	171	10.9	171	76	5	1520	36	11	13	35	1.81
20659--22524	341	5.5	339	76	5	1611	36	11	13	35	1.81
22788--23577	171	4.7	161	77	11	462	38	12	12	36	1.80
22959--23577	342	1.8	342	92	0	1040	38	12	12	36	1.80
23752--24069	171	1.9	171	87	2	469	38	11	12	37	1.79
25913--26185	148	1.8	149	88	0	413	38	14	12	34	1.84
25724--26665	319	2.9	323	79	7	841	38	12	11	36	1.81
26043--27581	171	9.0	168	77	5	1284	36	13	11	37	1.81
26098--27581	683	2.2	682	79	3	1522	36	13	11	37	1.81
26122--27581	170	8.5	170	75	6	603	36	13	11	37	1.81
27662--28839	169	6.9	168	75	5	720	35	13	12	36	1.82
27662--29103	171	8.5	170	73	5	930	35	12	11	36	1.80
30036--30704	171	3.9	171	76	3	517	35	12	14	36	1.83
31611--32126	171	3.0	167	76	8	491	37	10	14	37	1.81
33515--34737	171	7.2	170	80	3	1132	38	10	14	35	1.81
33515--34619	514	2.2	512	81	4	1240	38	10	14	35	1.81
35533--36465	169	5.5	171	77	4	782	39	11	12	35	1.78
35530--36465	339	2.7	330	76	10	781	39	11	12	35	1.78
36635--37234	171	3.5	170	75	3	587	36	12	13	35	1.83
37172--37300	64	2.0	64	87	3	188	22	16	23	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37236--38905	171	9.8	169	71	5	857	36	10	12	34	1.78
39289--39663	171	2.2	171	83	3	459	40	13	11	34	1.81
40453--41809	170	8.0	169	76	5	1074	35	12	12	37	1.81
40453--41809	341	4.0	338	77	5	1132	35	12	12	37	1.81
42293--42916	171	3.7	171	82	3	727	35	12	14	36	1.83
42781--43049	148	1.8	148	85	3	380	32	11	16	39	1.85
43704--44024	171	1.9	161	82	2	322	40	9	10	36	1.73
45902--45940	20	1.9	20	84	5	51	30	15	12	41	1.85
47003--47612	171	3.6	171	80	4	685	37	12	12	37	1.82
48847--49724	171	5.1	171	78	4	758	37	10	13	36	1.79
48854--49724	342	2.5	340	76	6	837	37	9	13	36	1.79
50510--50843	172	2.0	161	74	10	226	37	12	15	34	1.85
50209--51372	171	6.8	170	75	4	957	37	11	13	35	1.82
50209--51358	508	2.3	505	77	7	1108	36	11	13	35	1.82
52052--54938	171	16.9	171	75	4	1670	36	12	13	36	1.81
54987--55862	171	5.1	171	79	3	816	37	12	13	35	1.82
55017--55862	342	2.5	341	80	3	918	37	12	13	35	1.82

Tables:   1

The End!