genome.fa.s147.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397400.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_411.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25074

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--2175	171	12.7	169	77	5	1773	37	12	13	35	1.83
5--2178	857	2.5	854	79	4	1994	37	12	13	35	1.83
11--2179	513	4.2	506	78	5	1953	37	12	13	35	1.83
2284--4954	171	15.7	170	76	6	1761	35	13	12	36	1.83
2284--4934	342	7.8	341	77	6	2056	35	13	12	36	1.83
2284--5295	683	4.4	676	77	6	2292	35	13	12	36	1.83
2284--4949	683	3.9	678	77	5	2319	35	13	12	36	1.83
7840--10344	171	14.7	171	79	4	2386	37	12	13	36	1.82
7840--10344	340	7.4	338	80	5	2379	37	12	13	36	1.82
7840--10344	511	4.9	508	80	5	2457	37	12	13	36	1.82
10445--10796	169	2.1	171	83	2	458	32	15	12	38	1.85
11000--12599	171	9.4	170	72	4	875	34	13	11	35	1.81
13387--13711	170	1.9	171	80	3	377	34	12	12	40	1.81
13442--14090	170	3.9	163	75	9	432	32	15	12	36	1.84
14662--16782	171	12.4	167	79	7	2005	34	13	12	38	1.84
14662--16782	514	4.1	513	81	5	2273	34	13	12	38	1.84
17770--19379	171	9.4	170	78	6	1356	35	14	12	37	1.84
17771--19377	515	3.1	512	80	4	1517	35	14	12	37	1.84
17774--19342	343	4.6	340	79	5	1419	35	14	12	37	1.83
17770--19350	514	3.1	512	81	4	1388	35	14	12	37	1.83
22365--24780	171	14.1	170	77	3	1965	34	13	12	37	1.83
23999--24039	21	2.0	21	85	0	55	46	17	17	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23174--24780	683	2.3	680	81	5	1848	35	13	12	39	1.82
22693--24677	854	2.3	854	80	4	2043	35	13	11	37	1.82

Tables:   1

The End!