Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398732.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2015.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16184

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--470
171
2.7
171
79
1
526
38
11
13
32
1.81
3198--3515
170
1.9
171
82
3
408
32
14
11
38
1.81
3652--3959
169
1.8
171
82
5
401
37
10
12
39
1.77
5009--5657
170
3.9
161
70
12
357
34
9
10
39
1.73
4982--6120
340
3.3
334
76
5
955
33
11
10
39
1.76
4982--6125
171
6.7
170
73
5
546
33
11
10
39
1.76
9237--9554
172
1.9
161
83
7
331
35
11
11
38
1.78
12217--12532
171
1.9
161
81
2
303
34
12
10
38
1.78
13637--13954
171
1.9
161
82
5
320
37
9
12
36
1.77
13541--14275
170
4.3
172
74
5
623
37
10
13
35
1.79

Tables:   1

The End!