genome.fa.s148.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397401.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3707.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24974

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1405	170	8.3	170	77	5	1054	38	11	13	36	1.81
1--2232	341	6.6	338	75	8	1420	38	12	13	35	1.83
1276--1555	149	1.9	149	80	4	332	41	11	12	33	1.79
1421--2231	173	4.8	166	77	9	632	38	13	13	34	1.85
583--2278	827	2.0	825	83	3	2158	38	12	13	34	1.83
2605--3094	171	2.9	170	81	8	536	38	13	13	34	1.84
2711--3094	170	2.3	168	82	8	465	39	13	13	32	1.84
2980--3263	149	1.9	149	85	2	392	39	10	15	34	1.82
3153--3525	171	2.2	170	81	4	428	37	14	12	35	1.83
3852--4277	229	1.9	228	82	3	543	36	12	14	35	1.84
4080--4428	171	2.0	170	85	3	461	37	13	14	34	1.86
4139--4576	170	2.6	168	80	5	479	38	12	14	35	1.83
4554--4602	20	2.4	20	93	3	80	32	12	24	30	1.92
5119--5996	169	5.2	169	76	7	727	35	13	11	38	1.82
5384--5965	160	3.5	162	81	6	505	35	15	12	36	1.85
6142--8028	171	11.1	170	77	6	1666	35	14	12	37	1.84
6129--8009	683	2.8	677	80	5	1932	35	14	12	37	1.84
9258--9691	171	2.5	169	78	6	376	34	12	13	37	1.82
9685--12835	171	18.5	170	77	6	2256	35	12	12	39	1.81
9685--12864	341	9.3	339	77	6	2411	35	12	12	39	1.81
12974--13567	170	3.5	170	76	8	541	35	12	12	39	1.81
13588--18902	171	31.3	171	76	6	3869	34	14	12	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18928--20988	171	12.2	169	71	10	833	35	13	11	38	1.81
19504--20966	339	4.3	342	77	7	978	36	13	11	38	1.81
19543--20988	170	8.5	170	76	7	1166	35	12	11	39	1.80
21238--21865	342	1.8	339	81	5	764	34	12	12	37	1.82
21092--21867	169	4.6	171	74	6	669	35	13	12	37	1.82
22272--23280	170	5.9	169	77	5	911	40	13	12	33	1.82
22268--24097	341	5.4	337	75	10	1095	39	12	12	34	1.81
23362--23693	170	2.0	161	77	11	325	35	11	13	35	1.82
23307--24109	171	4.7	170	77	6	710	37	11	13	35	1.80
24564--24974	171	2.4	171	81	7	483	36	13	12	38	1.82

Tables:   1

The End!