Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397402.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3118.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24426

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1484--2694
170
7.1
169
72
5
615
34
12
11
37
1.79
2173--2498
169
1.9
169
80
4
381
37
11
11
38
1.79
6815--7267
168
2.7
158
80
9
372
35
12
13
34
1.82
6641--9155
171
14.7
171
76
4
1708
36
11
12
34
1.80
6668--9016
512
4.6
496
73
7
1032
36
11
12
34
1.80
6668--9015
341
6.9
342
74
5
1222
36
11
12
34
1.80
9364--10414
171
6.2
170
73
6
725
36
10
14
34
1.81
9376--10050
341
2.0
331
79
9
708
37
11
13
35
1.81
11264--13109
171
10.8
169
75
4
1167
36
11
13
33
1.81
14910--15734
171
4.8
169
76
8
602
37
11
14
34
1.83
14910--15686
342
2.3
339
78
5
780
38
11
14
34
1.82
15922--15973
21
2.5
21
96
0
95
34
11
26
26
1.91
20990--22237
171
7.3
171
79
6
1133
35
13
11
39
1.80
21092--22237
341
3.4
339
80
6
1128
35
13
10
39
1.80
22519--23033
173
3.0
170
82
7
585
34
14
11
39
1.82

Tables:   1

The End!