Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398758.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2040.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18229

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
787--1118
168
2.0
158
72
17
289
34
12
15
34
1.85
1133--1284
81
1.9
81
82
5
191
29
13
17
39
1.88
1903--3033
172
6.6
170
81
4
1201
36
12
14
35
1.84
1903--3005
507
2.2
511
81
5
1302
37
12
14
35
1.85
3045--3762
172
4.2
171
78
2
771
36
11
15
34
1.84
3052--3762
343
2.1
342
84
0
920
36
11
15
34
1.84
5686--5780
46
2.1
45
84
2
118
33
9
8
48
1.66
5849--6581
171
4.3
170
73
6
532
32
13
11
38
1.80
5839--6575
343
2.1
343
79
2
825
32
13
11
38
1.80
7724--9372
171
9.6
172
77
7
1484
35
13
11
39
1.82
7724--9372
343
4.8
339
81
4
1719
35
13
11
39
1.82
7771--9372
854
1.9
853
81
6
1861
34
13
11
39
1.81
9743--12012
171
13.4
169
77
8
1893
35
14
11
38
1.82
9743--12020
513
4.5
510
79
6
2200
35
14
11
38
1.82
11391--11831
154
2.7
160
80
7
448
35
15
12
36
1.85
12424--12797
171
2.2
171
81
3
432
35
13
12
38
1.82
13365--14727
171
8.0
168
79
5
1189
35
13
12
38
1.82
13391--14727
514
2.6
511
79
7
1341
35
13
12
37
1.83
13365--14727
342
4.0
339
80
4
1426
35
13
12
38
1.82

Tables:   1

The End!