genome.fa.s152.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397405.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1662.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23379

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
748--1370	171	3.6	170	81	3	633	36	13	14	34	1.86
2542--2954	173	2.4	173	81	5	471	37	13	12	35	1.84
2985--3035	21	2.4	21	96	0	93	41	5	25	27	1.78
5172--5715	172	3.2	171	81	3	623	38	12	12	34	1.81
5172--5737	171	3.3	171	81	3	631	38	12	12	34	1.81
5513--5972	235	2.0	235	90	1	726	38	13	13	34	1.83
6041--6835	171	4.7	170	81	4	882	38	13	13	34	1.83
7189--7648	171	2.7	169	80	6	498	39	14	11	35	1.82
7957--8265	170	1.8	170	81	6	385	38	12	13	34	1.84
8950--8998	13	3.6	13	78	15	55	69	4	26	0	1.06
11900--13767	343	5.5	340	77	4	1547	35	13	12	37	1.81
11896--13756	171	10.9	172	75	6	1186	35	13	12	37	1.82
14038--14366	171	2.0	161	77	12	310	35	13	13	34	1.84
15341--15699	171	2.1	169	81	9	399	35	13	12	39	1.82
15563--15842	143	2.0	143	83	4	359	37	13	10	37	1.80
15706--18775	171	18.0	173	78	6	2517	35	14	11	38	1.82
15706--18775	343	9.0	341	77	6	2608	35	14	11	38	1.82
18629--18908	149	1.9	149	81	3	348	36	17	13	32	1.89
19816--20646	171	4.9	169	83	3	911	35	12	12	39	1.81
19816--20595	340	2.3	339	85	3	1032	35	13	12	38	1.83
21932--23379	171	8.5	171	76	6	909	35	14	12	37	1.83
21932--23379	342	4.2	341	79	5	1424	35	14	12	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21969--23285	513	2.6	515	77	5	1139	35	13	11	38	1.82

Tables:   1

The End!