Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397409.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3559.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22925

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2370
171
13.9
171
76
3
1787
36
12
12
35
1.82
2501--5326
171
16.5
172
75
4
1930
35
13
12
36
1.82
2854--5313
343
7.2
338
76
5
1222
35
13
12
37
1.82
2501--5328
514
5.5
510
76
3
2314
35
13
12
36
1.82
2524--5332
685
4.1
682
76
4
2045
35
13
12
36
1.82
6131--6528
171
2.3
171
79
4
435
38
14
8
38
1.77
7534--11895
171
25.6
171
75
4
3113
36
12
12
36
1.81
7534--20431
513
25.3
513
71
6
3974
34
12
11
35
1.80
12029--16255
171
24.8
170
71
6
2216
34
12
11
36
1.80
12029--15968
512
7.7
509
72
6
1627
34
12
11
35
1.80
16306--16764
171
2.7
170
88
2
634
35
15
12
36
1.85
16819--22925
171
35.5
171
70
5
2371
33
12
11
35
1.79
16819--19083
683
3.3
682
77
4
1964
35
12
11
37
1.80
16819--18903
854
2.5
833
76
7
1852
35
13
11
37
1.80
20686--22924
340
6.6
341
79
4
2155
35
13
12
37
1.83

Tables:   1

The End!