Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397410.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_179.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22651

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
175--557
172
2.2
172
82
2
430
34
12
11
38
1.80
1085--1564
172
2.8
168
75
8
448
37
13
10
38
1.79
2687--3011
172
1.9
171
84
4
431
35
10
13
40
1.79
3754--4159
171
2.4
171
78
2
440
36
12
9
38
1.76
5027--6322
172
7.6
171
75
6
709
35
12
11
37
1.81
5353--6322
343
2.8
342
77
4
825
36
13
11
37
1.80
6424--7024
171
3.5
171
75
4
480
32
10
13
39
1.79
7208--7523
171
1.9
162
86
2
375
35
14
12
35
1.83
8573--10661
342
6.2
338
72
8
944
33
13
11
37
1.81
9002--9950
343
2.8
341
74
3
846
31
12
11
40
1.79
10073--10640
170
3.3
170
77
7
497
35
13
11
38
1.80
17289--17784
171
2.9
170
74
9
468
33
14
11
39
1.83
17287--17784
173
2.9
169
74
8
486
33
14
11
39
1.83
17921--19316
170
8.2
170
77
8
1103
35
13
11
38
1.81
17921--19316
342
4.1
338
77
8
1165
35
13
11
38
1.81
17923--19125
513
2.3
509
80
6
1281
35
13
12
38
1.82
20468--22651
171
12.8
168
72
7
1030
35
12
10
37
1.79
20457--22298
513
3.6
508
74
8
1274
35
12
11
38
1.79

Tables:   1

The End!