Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397414.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1130.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21837

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
407--445
18
2.2
18
100
0
78
48
12
15
23
1.79
2308--2650
171
2.1
160
79
9
343
36
12
14
32
1.84
5396--5787
171
2.3
169
80
6
463
36
16
11
35
1.85
5954--6975
171
6.0
170
76
5
900
35
14
12
37
1.84
6307--6975
339
2.0
330
78
5
691
34
14
12
37
1.83
5958--6975
510
2.0
511
84
2
1353
35
14
12
37
1.84
7562--9046
342
4.3
340
81
5
1602
36
14
11
37
1.83
7562--9046
683
2.2
682
82
6
1774
36
14
11
37
1.83
7562--9046
171
8.7
170
81
4
1413
36
14
11
37
1.83
9221--9260
21
2.0
20
85
5
53
45
17
10
27
1.80
10226--10707
161
3.0
160
79
7
537
36
15
12
35
1.85
11392--11780
173
2.3
173
81
2
433
35
14
11
35
1.83
11482--11922
173
2.6
171
81
4
485
34
12
11
39
1.79
12826--17999
171
30.4
169
73
6
2469
34
13
11
36
1.81
13856--15375
343
4.5
324
72
14
734
33
13
12
36
1.83
12779--19772
683
10.3
676
71
9
2106
34
13
11
36
1.82
12826--17425
685
6.7
678
76
6
2427
34
13
11
36
1.81
12826--19752
513
13.6
505
72
8
2432
34
13
11
36
1.82
12835--19772
684
10.2
668
72
8
2411
34
13
11
36
1.82
18024--19772
171
10.2
171
74
6
1337
35
14
12
36
1.85
18814--19772
341
2.8
342
82
2
989
35
15
12
35
1.85
19641--19883
129
1.9
129
86
1
353
34
12
16
35
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19931--20257
171
2.0
161
80
6
295
37
13
11
34
1.82
20583--21148
171
3.3
166
77
6
555
35
14
12
37
1.84

Tables:   1

The End!