genome.fa.s162.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397415.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_353.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21610

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2081--3192	171	6.5	171	77	5	854	34	13	13	38	1.84
2320--3088	343	2.2	341	81	4	877	33	13	13	39	1.84
3295--5330	171	11.9	171	77	5	1599	39	12	13	34	1.82
3295--5330	683	3.0	673	79	5	2014	39	12	13	34	1.82
9743--12812	170	18.1	169	74	9	1936	38	12	13	35	1.82
9745--12812	340	9.0	337	76	7	2269	38	12	13	35	1.82
12996--14164	170	6.8	171	75	6	833	37	12	13	36	1.83
13002--13877	171	5.1	172	74	8	384	37	12	14	35	1.83
14168--17326	171	18.7	165	73	11	1267	39	11	13	35	1.82
14717--17326	171	15.4	171	77	7	2117	39	11	13	35	1.82
14167--17326	341	9.4	341	76	9	2473	39	11	13	35	1.82

Tables:   1

The End!