genome.fa.s1621.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398874.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2156.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6026

Tables:   1   

This is table  1  of  1  ( 7 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--898	171	5.2	171	75	7	680	34	13	14	37	1.85
145--898	342	2.2	342	80	6	805	34	13	14	36	1.86
1162--3184	171	11.8	170	78	4	1762	34	13	13	38	1.83
1162--3184	342	5.9	340	80	3	1956	34	13	13	38	1.83
1162--3184	683	3.0	670	78	6	2110	34	13	13	38	1.83
3617--4464	171	5.0	169	74	8	527	35	12	13	36	1.82
5713--6026	171	1.9	160	82	3	317	33	14	13	36	1.84

Tables:   1

The End!