Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397416.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_917.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21402

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94--3730
171
21.3
171
77
5
2853
35
13
11
37
1.81
13--3730
515
7.3
507
76
6
2904
35
13
11
37
1.81
401--3713
858
3.9
843
75
8
2024
35
13
12
37
1.81
12166--12226
21
2.9
22
72
16
65
59
0
39
1
1.08
13504--13559
25
2.2
25
81
9
60
21
16
32
30
1.95
14911--15881
170
5.7
170
73
7
580
34
14
11
35
1.82
15909--16729
171
4.8
170
73
4
432
33
13
10
38
1.78
16481--16795
171
1.9
161
76
11
305
33
11
11
40
1.78
16975--17502
171
3.1
170
77
10
425
35
14
12
38
1.83
18461--19276
170
4.8
169
75
10
673
33
13
11
40
1.81
18461--19198
340
2.2
340
80
6
823
33
13
11
40
1.81
19353--20000
170
3.8
171
83
3
632
33
13
14
37
1.85
19462--19860
171
2.3
171
91
1
640
32
13
15
39
1.85
19333--20000
341
2.0
341
80
5
753
33
13
13
38
1.84
20107--21399
171
7.6
171
73
7
773
33
12
12
38
1.81
20325--21399
342
3.1
341
77
5
981
33
12
11
38
1.80

Tables:   1

The End!