genome.fa.s165.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397418.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_453.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21301

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419--1958	171	9.0	170	76	4	1119	35	13	12	38	1.83
419--1962	341	4.5	339	74	6	1073	35	13	12	38	1.83
2475--6179	170	21.8	172	74	7	2439	34	13	12	39	1.81
2475--6179	341	10.9	342	75	8	2351	34	13	12	39	1.81
2475--6177	513	7.3	506	75	8	2213	34	13	12	39	1.81
6642--11123	171	26.3	168	76	8	3135	34	13	12	38	1.83
6642--11123	341	13.1	340	76	7	3285	34	13	12	38	1.83
10637--10681	22	2.0	22	82	0	54	35	4	6	53	1.47
6642--12859	512	12.0	504	73	10	3592	34	13	12	38	1.83
11043--11203	85	1.9	85	87	2	234	34	21	13	29	1.92
10901--11372	256	1.8	256	82	2	599	34	15	13	36	1.87
10570--11722	599	1.9	597	82	4	1430	34	13	13	39	1.84
11135--12859	171	10.1	171	78	4	1589	34	12	13	39	1.83
6619--12839	683	9.0	678	74	10	3489	34	13	12	38	1.83
14661--16448	170	10.5	170	79	5	1432	34	14	12	38	1.84
14661--16448	341	5.2	338	78	7	1501	34	14	12	38	1.84
16512--17758	171	7.3	170	78	5	1029	34	13	11	39	1.82
16532--17758	341	3.6	337	79	4	1198	34	13	11	39	1.82
18224--21301	171	17.9	171	74	6	1898	33	13	12	38	1.82
20562--20897	169	2.0	170	83	3	426	36	12	12	38	1.80

Tables:   1

The End!