Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397419.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1555.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21229

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63--2777
171
15.9
171
79
4
2591
39
12
13
33
1.84
8173--9902
171
10.1
170
73
6
1077
35
13
11
38
1.81
8491--9902
511
2.8
509
76
6
1125
35
13
11
39
1.82
8491--9810
340
3.9
335
77
5
1084
35
13
11
39
1.81
10390--10721
171
1.9
172
80
6
388
34
13
12
38
1.83
12226--13355
171
6.6
169
75
6
913
33
14
12
39
1.84
12228--13355
341
3.3
335
78
6
1040
33
14
12
39
1.84
12225--13357
512
2.2
511
81
5
1313
33
14
12
39
1.84
15874--20240
171
25.6
171
75
6
2858
38
13
12
33
1.83
20131--20345
116
1.9
116
84
0
295
40
12
15
31
1.84
20248--20776
172
3.1
167
81
8
563
41
12
12
33
1.80

Tables:   1

The End!