genome.fa.s1673.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398926.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2210.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29931

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522--1605	171	6.4	170	83	5	1124	39	10	13	35	1.79
1738--2530	173	4.6	171	81	4	825	41	10	13	35	1.79
4613--4934	170	2.0	160	81	3	290	37	10	11	34	1.77
5160--6069	171	5.3	167	78	5	858	35	13	10	39	1.80
8805--9117	172	1.8	173	81	6	393	41	11	12	34	1.79
8065--10432	342	6.9	337	72	7	1159	37	11	14	33	1.82
8065--10432	170	13.8	171	74	4	1477	37	11	14	33	1.82
12128--15917	171	22.3	170	76	6	2792	39	11	13	34	1.81
15965--16673	171	4.2	169	82	5	782	38	11	13	35	1.81
16027--16662	343	1.9	340	84	3	857	38	11	14	35	1.83
16932--19589	171	15.5	169	74	4	1429	37	11	12	34	1.79
16934--17681	343	2.2	341	80	6	789	38	12	11	35	1.80
18020--18388	170	2.2	171	79	6	390	40	9	13	33	1.77
18528--19251	173	4.2	170	79	6	584	37	10	13	35	1.79
20022--20353	172	2.0	161	85	3	371	39	9	12	34	1.77
21462--23043	513	3.1	508	80	5	1499	38	11	13	34	1.80
21450--23047	341	4.7	339	77	6	1422	38	11	13	35	1.80
23150--23635	171	2.8	170	80	7	475	38	12	12	35	1.82
23246--23661	172	2.4	171	80	5	455	40	11	13	33	1.81
24128--24844	171	4.2	170	80	6	740	39	10	12	36	1.79
24152--24824	341	2.0	340	83	3	843	39	10	12	36	1.78
25816--26753	171	5.5	167	67	8	435	37	11	11	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27019--27446	172	2.5	160	78	12	351	36	10	14	34	1.82
26976--27695	169	4.2	167	76	5	575	37	11	13	34	1.81
29268--29927	172	3.8	169	77	4	514	39	11	11	33	1.78

Tables:   1

The End!