Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397422.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5186.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20806

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
478--7328
171
39.8
170
74
9
4287
37
12
14
35
1.84
478--5028
341
13.4
341
79
6
4087
37
12
14
35
1.84
4965--5090
65
1.9
68
87
8
188
42
6
19
31
1.76
4804--5248
238
1.9
237
84
6
607
38
11
15
34
1.85
5041--7328
170
13.4
170
81
5
2188
37
11
14
35
1.83
478--7328
512
13.3
508
75
9
4512
37
12
14
35
1.84
7709--8015
169
1.8
169
80
4
368
36
10
13
36
1.79
8232--8838
331
1.8
331
79
4
704
35
12
13
36
1.83
9263--10025
171
4.5
169
81
5
838
39
11
13
35
1.81
10183--12889
344
7.9
341
76
7
1884
39
10
13
36
1.80
10179--12889
516
5.3
510
78
7
2213
39
10
13
36
1.80
10127--12895
171
16.2
169
75
9
1738
39
11
13
36
1.81
12908--14940
343
5.9
344
76
7
1632
38
11
13
35
1.81
12908--14975
170
12.0
171
76
7
1636
38
11
13
35
1.81
12908--14959
514
4.0
506
78
7
1757
38
11
13
35
1.81
15945--17097
171
6.8
170
81
3
1180
38
10
14
36
1.81
17212--20804
171
21.1
169
76
7
2946
38
11
14
35
1.83
15894--20806
682
7.2
677
77
5
4810
37
11
14
35
1.82

Tables:   1

The End!