Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398949.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2231.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19458

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
148--576
170
2.5
171
79
3
398
37
12
13
34
1.82
2937--4246
171
7.7
170
72
4
673
36
11
11
33
1.78
4365--4978
172
3.6
172
82
2
714
37
11
12
36
1.79
7701--8013
171
1.9
162
83
2
324
35
12
10
38
1.77
8798--10829
172
11.8
172
71
6
455
34
12
11
37
1.80
9190--10829
172
9.5
170
72
6
1022
34
12
11
37
1.79
10972--11439
172
2.7
171
79
2
492
36
11
14
37
1.82
11415--11459
19
2.4
19
96
0
81
44
11
24
20
1.83
11415--11466
19
2.7
19
90
3
68
40
13
21
25
1.89
11600--12880
171
7.5
169
72
9
649
34
12
11
39
1.78
13703--14067
172
2.1
172
81
4
414
37
12
11
38
1.80
13949--14277
171
2.0
161
81
5
306
33
12
12
38
1.81
15269--15751
171
2.8
171
81
1
518
34
13
12
36
1.83
15273--15809
171
3.1
171
78
2
443
34
12
12
36
1.82
17389--18522
170
6.6
171
74
8
637
34
12
12
38
1.81
17389--18524
513
2.2
511
78
3
1179
34
12
12
38
1.81
16649--18520
171
11.0
170
71
6
857
33
12
12
37
1.80

Tables:   1

The End!