genome.fa.s171.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397424.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1363.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20694

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--642	173	3.7	172	83	3	742	37	13	13	35	1.84
635--4906	171	25.0	170	77	4	3429	37	12	13	35	1.83
5303--7909	171	15.3	170	77	5	2005	37	12	13	36	1.82
5303--7909	511	5.1	506	77	6	1700	37	12	13	36	1.82
8785--15596	343	19.8	339	71	9	1546	36	12	13	35	1.82
8379--10369	172	11.6	171	74	5	1381	37	12	13	34	1.82
8379--15540	171	41.6	172	71	7	3134	36	12	13	35	1.82
10493--15593	343	14.9	343	74	8	2964	37	12	13	35	1.82
14412--14438	12	2.2	12	100	0	54	33	7	18	40	1.78
15599--18090	171	14.8	171	79	6	2364	31	13	15	39	1.85

Tables:   1

The End!