Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397426.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_942.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20329

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
167--537
171
2.2
170
80
5
423
36
12
12
38
1.82
688--2825
171
12.6
170
77
6
1847
35
14
12
38
1.83
688--2815
341
6.2
338
80
6
2051
35
14
12
38
1.83
4148--4611
170
2.8
160
76
11
310
33
13
15
35
1.86
4050--5137
171
6.4
170
78
5
980
36
12
14
35
1.85
4050--5129
343
3.2
337
78
6
1014
36
12
14
35
1.85
5371--5776
170
2.4
172
85
4
545
37
10
14
37
1.80
5968--8486
170
14.7
170
73
7
1569
36
12
14
35
1.84
8437--8570
42
3.2
42
96
1
252
23
14
10
51
1.73
8953--9291
171
2.0
170
79
5
362
35
12
16
35
1.87
9544--10091
171
3.2
171
75
11
539
35
12
14
36
1.85
10129--10230
31
3.2
31
63
13
80
28
15
16
39
1.90
10126--10251
65
1.9
65
95
3
227
24
18
15
41
1.89
10199--19834
171
56.9
170
75
8
6776
37
12
14
35
1.83
9542--18469
341
26.4
338
76
7
6439
37
12
14
35
1.84

Tables:   1

The End!