Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397428.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2739.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19525

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
418--5083
172
27.3
170
77
5
3827
34
13
11
39
1.81
423--5077
171
27.2
170
77
5
3862
34
13
11
39
1.81
5250--6682
172
8.4
169
76
7
1084
34
13
12
38
1.83
5250--6682
170
8.4
169
76
7
1132
34
13
12
38
1.83
5250--6682
342
4.2
343
78
7
1254
34
13
12
38
1.83
5250--6682
514
2.8
508
80
6
1484
34
13
12
38
1.83
6850--9616
171
16.2
170
79
5
2386
39
12
12
35
1.81
6835--9616
341
8.1
338
78
6
2344
39
12
12
35
1.81
9742--17754
170
47.4
168
74
10
3760
35
13
11
39
1.81
9744--11079
171
7.9
169
75
8
1042
34
13
12
39
1.83
11084--17754
170
39.3
169
77
7
5110
35
13
11
39
1.81
11084--17754
512
13.1
506
78
7
5332
35
13
11
39
1.81
17932--19523
342
4.7
339
77
5
1362
35
13
11
39
1.80
17932--19525
170
9.3
170
77
6
1259
35
13
11
39
1.81
18002--19513
512
2.9
503
78
6
1445
35
12
11
39
1.80

Tables:   1

The End!