genome.fa.s1762.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399015.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2295.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8157

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--2377	171	13.7	167	73	12	1259	37	12	14	35	1.83
116--2377	511	4.3	509	74	10	1260	38	12	14	35	1.83
16--2377	341	6.8	336	72	11	1264	37	12	14	35	1.83
1347--2377	350	3.0	342	77	9	952	38	12	13	35	1.83
2317--2446	69	1.9	69	85	3	181	24	16	16	41	1.89
2149--2619	242	2.0	241	81	5	567	34	14	14	37	1.86
2021--2768	414	1.8	413	80	5	902	37	12	13	36	1.83
2386--3187	171	4.7	172	80	5	753	37	12	13	36	1.83
2386--3187	343	2.3	339	79	5	839	37	12	13	36	1.83
3426--4271	171	4.9	172	80	6	806	39	11	13	35	1.81
3426--4271	343	2.5	339	78	7	852	39	11	13	35	1.81
4465--5505	171	6.1	170	79	6	937	39	12	13	34	1.82
4465--5500	342	3.0	336	79	7	1050	39	12	13	34	1.82
5524--6313	171	4.6	169	77	6	696	38	13	13	34	1.84
6415--7722	171	7.6	170	76	5	981	34	13	12	38	1.82

Tables:   1

The End!