Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397430.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1920.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19495

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
727--1340
169
3.7
161
79
6
583
34
12
12
39
1.81
2345--2692
170
2.0
170
81
4
398
34
11
13
37
1.81
2921--4074
170
6.8
167
73
7
640
33
13
11
36
1.82
3298--4025
340
2.2
328
79
7
743
34
14
11
36
1.81
3356--4076
170
4.2
169
75
4
648
33
13
10
37
1.80
5756--5792
19
1.9
19
94
0
65
35
5
5
54
1.47
5863--6216
169
2.1
170
83
6
434
37
11
12
38
1.79
7247--7578
170
2.0
170
85
3
454
39
11
12
35
1.80
7699--9331
170
9.6
169
79
3
1628
39
12
12
34
1.80
7699--9330
682
2.4
678
80
4
1791
39
12
12
34
1.80
7712--9332
852
1.9
850
86
2
2295
40
12
12
34
1.80
9434--11351
171
11.3
169
75
5
1213
34
12
10
38
1.79
9501--10410
170
5.3
170
77
6
585
35
13
11
38
1.81
9434--11351
340
5.6
340
74
5
1266
34
12
10
38
1.79
12202--12909
170
4.2
171
75
2
629
34
13
11
37
1.81
13387--14702
170
7.7
167
78
6
1189
36
13
11
38
1.81
16953--17895
168
5.4
169
70
13
437
35
14
11
37
1.82
17596--17636
19
2.2
19
95
0
73
41
7
0
51
1.30

Tables:   1

The End!