genome.fa.s1781.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399034.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_231.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24135

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71--1347	173	7.4	171	80	4	1304	37	12	13	35	1.83
71--1347	344	3.7	341	82	5	1392	37	12	13	35	1.83
71--1338	517	2.5	515	81	5	1458	36	13	13	35	1.83
4356--5925	171	9.2	171	79	6	1473	39	11	12	36	1.81
4349--5925	342	4.6	341	80	6	1676	39	11	12	35	1.81
4356--5925	513	3.1	510	80	4	1725	39	11	12	36	1.81
8049--8096	19	2.5	19	100	0	96	41	6	16	35	1.74
7876--8249	191	2.0	191	81	4	441	37	11	14	36	1.82
8067--8609	171	3.2	171	74	4	479	35	12	14	35	1.84
9849--10298	171	2.6	171	81	1	499	39	13	12	35	1.82
10759--11071	170	1.8	170	81	3	387	36	12	12	35	1.82
12083--14198	342	6.2	340	82	4	2367	35	13	11	38	1.81
12083--14198	171	12.4	172	80	4	2111	35	13	11	38	1.81
15045--15291	135	1.8	134	82	7	313	34	10	12	41	1.79
15170--15815	170	3.8	170	79	5	655	35	13	11	38	1.82
16448--16848	171	2.3	170	80	7	445	37	11	14	36	1.82
17958--19994	172	11.8	170	74	5	1383	37	11	12	33	1.81
17957--19657	343	5.0	339	77	5	1552	37	12	13	34	1.81
21918--22884	172	5.6	171	75	3	598	34	12	13	36	1.82
21918--22888	343	2.8	342	76	5	877	34	12	13	36	1.82
22989--24135	170	6.7	170	81	4	1238	38	12	14	34	1.84
22996--24135	339	3.3	339	82	3	1233	38	12	14	34	1.83

Tables:   1

The End!