Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397434.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_701.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18529

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56--1873
171
10.6
169
78
6
1618
40
12
11
34
1.80
56--1873
341
5.3
339
78
7
1673
40
12
11
34
1.80
56--1873
512
3.6
505
79
7
1795
40
12
11
34
1.80
2790--3354
170
3.3
168
74
9
493
40
10
12
35
1.77
5467--7252
171
10.4
171
79
5
1676
38
13
14
33
1.85
5491--7252
514
3.4
512
80
5
1792
37
13
14
33
1.86
6870--7192
170
2.0
161
81
3
310
34
14
14
32
1.87
7941--14313
171
37.4
171
78
5
5533
38
12
14
34
1.84
14856--15190
171
2.0
159
77
8
312
37
13
14
32
1.85
15711--16717
171
5.9
172
76
4
840
36
12
14
34
1.84
16774--18525
171
10.3
170
78
4
1631
37
12
14
35
1.84
16774--18525
512
3.4
507
80
4
1865
37
12
14
35
1.84
16774--18525
343
5.1
342
79
4
1704
37
12
14
35
1.84
16776--18525
683
2.6
681
80
5
1818
37
12
14
35
1.84

Tables:   1

The End!