genome.fa.s182.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397435.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1111.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18504

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
221--524	156	2.0	155	84	3	405	35	14	13	36	1.85
881--1967	172	6.3	170	79	4	1058	37	12	12	37	1.82
371--1967	343	4.7	338	79	5	1445	36	13	12	37	1.82
2072--4887	172	16.5	171	80	4	2816	35	12	12	39	1.82
2072--4849	685	4.1	682	81	5	2948	35	12	12	38	1.82
2072--4880	857	3.3	852	87	2	3815	35	12	12	39	1.82
6210--7406	171	7.0	169	77	8	1030	35	13	12	38	1.82
6210--7406	341	3.5	336	78	7	1150	35	13	12	38	1.82
7748--10405	172	15.5	170	78	5	2361	36	13	13	37	1.83
7752--10390	343	7.7	340	80	5	2365	36	13	12	37	1.83
7748--10405	514	5.2	511	80	5	2547	36	13	13	37	1.83
11894--13099	172	7.0	168	79	6	1240	36	13	12	37	1.82
11894--13099	343	3.5	340	80	5	1326	36	13	12	37	1.82
15228--15535	170	1.9	160	83	4	210	35	14	12	36	1.85
14025--15825	171	10.5	169	71	5	964	35	13	12	34	1.82
16181--16492	171	1.8	170	86	2	455	37	14	13	33	1.86
17828--17877	21	2.4	21	93	0	82	26	14	10	50	1.73
17845--18266	171	2.5	169	81	5	454	37	13	12	36	1.82

Tables:   1

The End!