genome.fa.s183.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397436.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2523.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18375

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1669--2053	170	2.3	169	85	4	517	31	12	14	41	1.83
1016--1946	512	1.8	502	80	5	1029	35	12	11	38	1.80
2240--4119	171	11.0	170	76	6	1432	34	12	12	39	1.82
2240--3990	341	5.1	341	77	7	1359	34	12	12	39	1.81
4547--6335	171	10.5	170	76	3	1414	39	12	13	34	1.83
4548--6335	341	5.2	337	77	4	1455	39	12	13	34	1.83
4547--6222	512	3.3	510	78	4	1510	39	13	13	34	1.83
6562--9190	171	15.4	169	75	6	1946	38	12	13	34	1.83
6562--9190	341	7.7	340	78	6	2153	38	12	13	34	1.83
10018--10680	170	3.9	168	79	7	592	38	12	13	36	1.82
11649--11673	9	2.8	9	100	0	50	20	8	0	72	1.10
12824--14065	171	7.3	169	74	6	934	38	13	13	34	1.83
14166--14961	171	4.7	170	79	5	764	39	13	13	34	1.83
14166--14989	341	2.4	339	80	3	965	39	13	13	34	1.83
14970--14998	15	1.9	15	100	0	58	48	6	0	44	1.29
14368--15551	636	1.9	635	82	4	1508	38	12	14	34	1.85
15035--17696	171	15.6	170	74	3	1734	37	12	13	34	1.83
15003--17696	342	7.9	340	75	4	2114	37	12	14	34	1.83
15790--17696	854	2.2	853	79	4	1885	37	12	13	34	1.83

Tables:   1

The End!