Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397437.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1881.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18062

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
714--8896
171
47.7
171
73
9
4321
38
12
13
35
1.82
734--4496
682
5.5
677
75
8
1868
38
12
13
35
1.82
714--8778
511
15.7
511
72
10
4132
38
12
13
35
1.82
2701--2745
15
2.9
15
96
3
81
53
11
6
28
1.61
3246--5098
170
10.9
170
75
8
536
38
11
13
36
1.81
5077--5158
38
2.2
38
84
0
101
52
9
2
35
1.48
9126--9909
171
4.6
170
76
6
645
33
12
12
39
1.81
13647--14981
170
7.8
170
73
7
838
35
13
11
39
1.81
14727--15277
296
1.9
295
81
4
689
34
13
10
41
1.79
14567--15426
466
1.8
467
80
6
1037
35
14
10
39
1.81
14979--16890
170
11.2
168
75
8
1312
35
14
11
37
1.83
14979--16842
339
5.5
338
76
7
1278
35
14
11
38
1.82
16994--18053
171
6.2
170
78
7
784
34
12
12
39
1.82
16994--18055
342
3.1
338
77
6
1008
34
12
12
39
1.82
17104--18053
513
1.9
505
81
6
1164
34
12
12
40
1.81

Tables:   1

The End!