genome.fa.s1871.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399124.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_240.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24130

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13--2422	171	14.1	171	76	5	1703	34	13	12	37	1.83
12--2422	341	7.1	339	75	5	1659	34	13	12	37	1.83
112--2404	512	4.5	509	76	5	1671	34	13	12	38	1.82
2459--2810	171	2.1	171	82	6	437	35	14	13	36	1.85
3485--4606	171	6.6	169	78	7	1004	34	13	12	39	1.83
3486--4606	341	3.3	339	79	6	1171	34	13	12	39	1.83
3485--4606	513	2.2	508	80	5	1242	34	13	12	39	1.83
5210--6211	171	5.9	171	79	3	899	33	14	13	38	1.85
5211--6218	342	3.0	338	81	2	1045	33	14	13	38	1.85
6744--8303	171	9.1	170	76	7	1126	34	13	12	39	1.82
7558--7596	21	1.9	20	84	5	51	43	17	10	28	1.82
6749--8046	341	3.8	341	80	6	1110	34	13	12	40	1.82
6762--8283	511	3.0	504	80	6	1465	34	13	12	39	1.82
10433--11168	171	4.3	168	79	6	660	40	12	12	34	1.81
10452--11162	342	2.1	342	80	4	799	40	12	12	34	1.81
11270--11920	171	3.8	170	81	6	760	35	12	15	35	1.86
12219--12625	171	2.4	169	82	6	484	37	12	13	36	1.83
13053--13347	161	1.8	161	86	5	434	40	11	11	36	1.78
13956--14925	171	5.7	170	80	3	973	38	12	13	35	1.82
15331--15641	171	1.9	161	89	0	397	35	12	14	33	1.85
16730--18312	513	3.1	511	77	6	1497	37	12	14	35	1.84
16730--18314	171	9.3	171	77	6	1081	37	12	14	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16730--18314	342	4.6	339	75	6	1273	37	12	14	35	1.84
18509--19423	171	5.3	172	80	5	843	36	11	15	36	1.85
19456--23503	171	23.7	171	79	4	3344	38	12	14	35	1.84

Tables:   1

The End!