genome.fa.s1948.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399201.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_247.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18174

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8--2763	685	4.0	683	80	5	2580	38	12	13	34	1.82
8--2763	172	16.1	172	80	4	2321	38	12	13	34	1.82
26--2642	343	7.6	343	78	5	1616	38	12	13	34	1.82
4680--7208	171	14.8	170	81	4	2306	35	14	12	37	1.84
8015--9942	171	11.2	171	80	4	1871	37	12	13	35	1.83
8022--9942	343	5.6	340	80	4	1903	37	12	13	35	1.83
8015--9942	686	2.8	682	81	4	2164	37	12	13	35	1.83
10112--10437	170	2.0	161	76	8	298	36	13	14	33	1.85
14155--14469	171	1.9	161	85	6	350	38	13	11	33	1.81
14981--15353	170	2.2	171	82	5	443	41	14	12	31	1.83

Tables:   1

The End!